SELECT 
  q_product_prices.product_id, 
  MIN(
    IF(
      q_product_prices.percentage_discount = 0, 
      q_product_prices.price, 
      q_product_prices.price - (
        q_product_prices.price * q_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  q_product_prices 
WHERE 
  q_product_prices.product_id IN (
    9533, 9534, 9535, 9536, 9537, 9538, 9539, 
    9540, 9541, 9542, 9543, 9544, 9545, 
    9546, 9547, 9548
  ) 
  AND q_product_prices.lower_limit = 1 
  AND q_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  q_product_prices.product_id

Query time 0.00054

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "46.81"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "q_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 22,
        "rows_produced_per_join": 4,
        "filtered": "19.99",
        "index_condition": "(`portal`.`q_product_prices`.`product_id` in (9533,9534,9535,9536,9537,9538,9539,9540,9541,9542,9543,9544,9545,9546,9547,9548))",
        "cost_info": {
          "read_cost": "45.93",
          "eval_cost": "0.88",
          "prefix_cost": "46.81",
          "data_read_per_join": "105"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`portal`.`q_product_prices`.`lower_limit` = 1) and (`portal`.`q_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
9533 79.000000
9534 99.000000
9535 99.000000
9536 79.000000
9537 69.000000
9538 69.000000
9539 69.000000
9540 99.000000
9541 69.000000
9542 59.000000
9543 79.000000
9544 79.000000
9545 129.000000
9546 199.000000
9547 199.000000
9548 199.000000