SELECT 
  q_product_filters.filter_id, 
  q_product_features_values.variant_id 
FROM 
  q_product_features_values 
  LEFT JOIN q_products as products ON products.product_id = q_product_features_values.product_id 
  LEFT JOIN q_product_filters ON q_product_filters.feature_id = q_product_features_values.feature_id 
  LEFT JOIN q_product_features ON q_product_features.feature_id = q_product_features_values.feature_id 
  LEFT JOIN q_product_options_inventory as inventory ON inventory.product_id = products.product_id 
  LEFT JOIN q_companies AS companies ON companies.company_id = products.company_id 
  INNER JOIN q_products_categories as products_categories ON products_categories.product_id = products.product_id 
  INNER JOIN q_categories ON q_categories.category_id = products_categories.category_id 
  AND (
    q_categories.usergroup_ids = '' 
    OR FIND_IN_SET(0, q_categories.usergroup_ids) 
    OR FIND_IN_SET(1, q_categories.usergroup_ids)
  ) 
  AND q_categories.status IN ('A', 'H') 
WHERE 
  q_product_filters.filter_id IN (1, 3) 
  AND q_product_features_values.feature_id IN (2) 
  AND q_product_features_values.lang_code = 'en' 
  AND q_categories.category_id IN (
    249, 250, 435, 436, 490, 496, 500, 506, 
    251, 492, 497, 501, 507, 252, 498, 502, 
    508, 253, 499, 503, 509, 254, 489, 504, 
    255, 505, 532, 256, 271, 433, 434, 459, 
    484, 533, 535, 579, 595
  ) 
  AND companies.status = 'A' 
  AND (
    CASE products.tracking WHEN 'O' THEN inventory.amount > 0 WHEN 'B' THEN products.amount > 0 ELSE 1 END
  ) 
  AND (
    products.usergroup_ids = '' 
    OR FIND_IN_SET(0, products.usergroup_ids) 
    OR FIND_IN_SET(1, products.usergroup_ids)
  ) 
  AND products.status IN ('A') 
  AND q_product_features.feature_type IN ('S', 'M', 'E') 
GROUP BY 
  q_product_features_values.variant_id

Query time 0.01180

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "249.92"
    },
    "grouping_operation": {
      "using_temporary_table": true,
      "using_filesort": true,
      "cost_info": {
        "sort_cost": "6.22"
      },
      "nested_loop": [
        {
          "table": {
            "table_name": "inventory",
            "access_type": "system",
            "possible_keys": [
              "pc"
            ],
            "rows_examined_per_scan": 0,
            "rows_produced_per_join": 1,
            "filtered": "0.00",
            "const_row_not_found": true,
            "cost_info": {
              "read_cost": "0.00",
              "eval_cost": "0.20",
              "prefix_cost": "0.00",
              "data_read_per_join": "976"
            },
            "used_columns": [
              "product_id",
              "amount"
            ]
          }
        },
        {
          "table": {
            "table_name": "q_product_features",
            "access_type": "const",
            "possible_keys": [
              "PRIMARY"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "feature_id"
            ],
            "key_length": "3",
            "ref": [
              "const"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 1,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "0.00",
              "eval_cost": "0.20",
              "prefix_cost": "0.00",
              "data_read_per_join": "432"
            },
            "used_columns": [
              "feature_id",
              "feature_type"
            ]
          }
        },
        {
          "table": {
            "table_name": "q_product_filters",
            "access_type": "ref",
            "possible_keys": [
              "PRIMARY",
              "feature_id"
            ],
            "key": "feature_id",
            "used_key_parts": [
              "feature_id"
            ],
            "key_length": "3",
            "ref": [
              "const"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 0,
            "filtered": "50.00",
            "cost_info": {
              "read_cost": "1.00",
              "eval_cost": "0.10",
              "prefix_cost": "1.20",
              "data_read_per_join": "32"
            },
            "used_columns": [
              "filter_id",
              "feature_id"
            ],
            "attached_condition": "(`portal`.`q_product_filters`.`filter_id` in (1,3))"
          }
        },
        {
          "table": {
            "table_name": "products_categories",
            "access_type": "range",
            "possible_keys": [
              "PRIMARY",
              "pt"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "rows_examined_per_scan": 668,
            "rows_produced_per_join": 334,
            "filtered": "100.00",
            "using_index": true,
            "using_join_buffer": "Block Nested Loop",
            "cost_info": {
              "read_cost": "75.64",
              "eval_cost": "66.80",
              "prefix_cost": "143.64",
              "data_read_per_join": "5K"
            },
            "used_columns": [
              "product_id",
              "category_id"
            ],
            "attached_condition": "(`portal`.`products_categories`.`category_id` in (249,250,435,436,490,496,500,506,251,492,497,501,507,252,498,502,508,253,499,503,509,254,489,504,255,505,532,256,271,433,434,459,484,533,535,579,595))"
          }
        },
        {
          "table": {
            "table_name": "q_categories",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "c_status",
              "p_category_id"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "category_id"
            ],
            "key_length": "3",
            "ref": [
              "portal.products_categories.category_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 66,
            "filtered": "20.00",
            "cost_info": {
              "read_cost": "0.00",
              "eval_cost": "13.36",
              "prefix_cost": "210.44",
              "data_read_per_join": "176K"
            },
            "used_columns": [
              "category_id",
              "usergroup_ids",
              "status"
            ],
            "attached_condition": "(((`portal`.`q_categories`.`usergroup_ids` = '') or find_in_set(0,`portal`.`q_categories`.`usergroup_ids`) or find_in_set(1,`portal`.`q_categories`.`usergroup_ids`)) and (`portal`.`q_categories`.`status` in ('A','H')))"
          }
        },
        {
          "table": {
            "table_name": "products",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY",
              "status"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "product_id"
            ],
            "key_length": "3",
            "ref": [
              "portal.products_categories.product_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 62,
            "filtered": "93.11",
            "cost_info": {
              "read_cost": "0.00",
              "eval_cost": "12.44",
              "prefix_cost": "223.80",
              "data_read_per_join": "366K"
            },
            "used_columns": [
              "product_id",
              "status",
              "company_id",
              "amount",
              "usergroup_ids",
              "tracking"
            ],
            "attached_condition": "((case `portal`.`products`.`tracking` when 'O' then <cache>((NULL > 0)) when 'B' then (`portal`.`products`.`amount` > 0) else 1 end) and ((`portal`.`products`.`usergroup_ids` = '') or find_in_set(0,`portal`.`products`.`usergroup_ids`) or find_in_set(1,`portal`.`products`.`usergroup_ids`)) and (`portal`.`products`.`status` = 'A'))"
          }
        },
        {
          "table": {
            "table_name": "companies",
            "access_type": "eq_ref",
            "possible_keys": [
              "PRIMARY"
            ],
            "key": "PRIMARY",
            "used_key_parts": [
              "company_id"
            ],
            "key_length": "4",
            "ref": [
              "portal.products.company_id"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 6,
            "filtered": "10.00",
            "cost_info": {
              "read_cost": "0.00",
              "eval_cost": "1.24",
              "prefix_cost": "236.24",
              "data_read_per_join": "34K"
            },
            "used_columns": [
              "company_id",
              "status"
            ],
            "attached_condition": "(`portal`.`companies`.`status` = 'A')"
          }
        },
        {
          "table": {
            "table_name": "q_product_features_values",
            "access_type": "ref",
            "possible_keys": [
              "PRIMARY",
              "fl",
              "variant_id",
              "lang_code",
              "product_id",
              "fpl"
            ],
            "key": "fpl",
            "used_key_parts": [
              "feature_id",
              "product_id",
              "lang_code"
            ],
            "key_length": "12",
            "ref": [
              "const",
              "portal.products_categories.product_id",
              "const"
            ],
            "rows_examined_per_scan": 1,
            "rows_produced_per_join": 6,
            "filtered": "100.00",
            "cost_info": {
              "read_cost": "6.22",
              "eval_cost": "1.24",
              "prefix_cost": "243.71",
              "data_read_per_join": "4K"
            },
            "used_columns": [
              "feature_id",
              "product_id",
              "variant_id",
              "lang_code"
            ]
          }
        }
      ]
    }
  }
}